Strategy Command Manager 9.4.x-10.x outline to alter existing facts cannot directly change their mapping to add/remove some source tables from the fact expressions. This can be achieved in two steps as:
As an example, consider the fact 'Copy of Units Sold' defined as shown:

Consider that this fact needs to be modified using Strategy Command Manager 9.4.x-10.x to use Manual mapping and remove the 'ORDER_DETAIL' fact table from the 'QTY_SOLD' expression. This can be achieved as:

REMOVE EXPRESSION "QTY_SOLD" FROM FACT "Copy of Units Sold" IN FOLDER "\Schema Objects\Facts" FROM PROJECT "Strategy Tutorial";

ADD EXPRESSION "QTY_SOLD" EXPSOURCETABLES "ORDER_FACT" OVERWRITE TO FACT "Copy of Units Sold" IN FOLDER "\Schema Objects\Facts" FOR PROJECT "Strategy Tutorial";
This will change the mapping of the fact expression to Manual, and remove 'ORDER_DETAIL' as its source table, as shown:

Note: This approach cannot be used for facts which have only one expression whose source tables need to be changed. Removing the expression through Strategy Command Manager 9.4.x-10.x throws the following error:

You cannot remove the only expression from the fact 'xxx'. Please delete the fact if you want to remove the expression.